PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g12260.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 472aa    MW: 51234.1 Da    PI: 9.2643
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g12260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-40162240178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Zjn_sc00004.1.g12260.1.am.mk 162 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVItAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 240
                                   6******************************99835679*************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-33157225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.274160238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.72E-37161241IPR004333Transcription factor, SBP-box
PfamPF031101.0E-30163237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MMNIPAAGNS CDEFPYVSPS PPPPSLLPIM EQESSIQREQ LGYNLEANSL ALLPPSNAAA  60
AHQTTIACHG AHDILQFYPA ASSHYLAGGG NPYGHHFGGS AYQSYYQQAA QAAAPEYYFP  120
TLVSSAEENM ASFAATQLGL NLGYRTYFPP RGGYTYGHHP PRCQAEGCKA DLSSAKRYHR  180
RHKVCEHHSK APVVITAGGL HQRFCQQCSR FHLLDEFDDA KKSCRKRLAD HNRRRRKSKP  240
SDADAADKKR AQANKAAASK DSTSTNAILF SSTKLSTEVG SSSKSNMDTG DGLTTQIQGS  300
ALFSKEQDQG MDLGEVVKEA VDPKGKASMQ QQHANHHGMN HHGFPFPTSS GSCFPQSQAV  360
ASLRPNAFTK RAATDGFAGL YNSKGRTGWI RRQLTGLPTV SQAHHSIHKT GRYRRFCRPL  420
QLERPDWVDS TSADGPSNCL AGPPLNSQNG PLQMVLQAFT TRKAGLGGFD VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-271632371184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249RRRRKSKPSDADAADKKR
2233238RRRKSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894961e-161U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.10.0PREDICTED: protein LIGULELESS 1-like
SwissprotO040031e-156LG1_MAIZE; Protein LIGULELESS 1
TrEMBLK3Z6Z50.0K3Z6Z5_SETIT; Uncharacterized protein
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-40squamosa promoter binding protein-like 8